J4_9I5T_007

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAAAG*UUGAC*GGU*AGA

Length

16 nucleotides

Bulged bases

9I5T|1|A|A|2289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|U|2286
9I5T|1|A|A|2287
9I5T|1|A|A|2288
9I5T|1|A|A|2289
9I5T|1|A|G|2290
*
9I5T|1|A|U|2344
9I5T|1|A|U|2345
9I5T|1|A|G|2346
9I5T|1|A|A|2347
9I5T|1|A|C|2348
*
9I5T|1|A|G|2371
9I5T|1|A|G|2372
9I5T|1|A|U|2373
*
9I5T|1|A|A|2382
9I5T|1|A|G|2383
9I5T|1|A|A|2384

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain 7

Large ribosomal subunit protein bL35

Chain Z

Large ribosomal subunit protein bL27