J4_9I5V_008

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

9I5V|1|a|C|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5V|1|a|G|117
9I5V|1|a|C|118
9I5V|1|a|G|119
9I5V|1|a|U|120
9I5V|1|a|A|121
9I5V|1|a|A|122
9I5V|1|a|C|123
9I5V|1|a|G|124
*
9I5V|1|a|U|244
9I5V|1|a|C|245
*
9I5V|1|a|G|291
9I5V|1|a|U|292
9I5V|1|a|A|293
9I5V|1|a|G|294
*
9I5V|1|a|C|316
9I5V|1|a|C|317

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein bS16

Chain e

Small ribosomal subunit protein uS17