J4_9I5V_009

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CAUACAC*GGAAAU*AGC

Length

19 nucleotides

Bulged bases

9I5V|1|a|C|185, 9I5V|1|a|A|186, 9I5V|1|a|A|216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5V|1|a|G|145
9I5V|1|a|A|146
9I5V|1|a|G|147
*
9I5V|1|a|C|181
9I5V|1|a|A|182
9I5V|1|a|U|183
9I5V|1|a|A|184
9I5V|1|a|C|185
9I5V|1|a|A|186
9I5V|1|a|C|187
*
9I5V|1|a|G|212
9I5V|1|a|G|213
9I5V|1|a|A|214
9I5V|1|a|A|215
9I5V|1|a|A|216
9I5V|1|a|U|217
*
9I5V|1|a|A|224
9I5V|1|a|G|225
9I5V|1|a|C|226

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein bS20