J4_9I78_001

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UC*GAGUCG*CAAAAUG*UAAA

Length

19 nucleotides

Bulged bases

9I78|1|L1|U|291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|113
9I78|1|L1|C|114
*
9I78|1|L1|G|260
9I78|1|L1|A|261
9I78|1|L1|G|262
9I78|1|L1|U|263
9I78|1|L1|C|264
9I78|1|L1|G|265
*
9I78|1|L1|C|286
9I78|1|L1|A|287
9I78|1|L1|A|288
9I78|1|L1|A|289
9I78|1|L1|A|290
9I78|1|L1|U|291
9I78|1|L1|G|292
*
9I78|1|L1|U|309
9I78|1|L1|A|310
9I78|1|L1|A|311
9I78|1|L1|A|312

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Li

60S ribosomal protein L36