J4_9I78_002

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAG*CGCC*GAG*CGUAUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|180
9I78|1|L1|G|181
9I78|1|L1|A|182
9I78|1|L1|G|183
*
9I78|1|L1|C|199
9I78|1|L1|G|200
9I78|1|L1|C|201
9I78|1|L1|C|202
*
9I78|1|L1|G|206
9I78|1|L1|A|207
9I78|1|L1|G|208
*
9I78|1|L1|C|220
9I78|1|L1|G|221
9I78|1|L1|U|222
9I78|1|L1|A|223
9I78|1|L1|U|224
9I78|1|L1|A|225

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein