J4_9I78_005
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9I78|1|L1|U|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|U|1478
9I78|1|L1|C|1479
*
9I78|1|L1|G|1503
9I78|1|L1|G|1504
9I78|1|L1|U|1505
9I78|1|L1|U|1506
9I78|1|L1|A|1507
9I78|1|L1|G|1508
*
9I78|1|L1|C|1594
9I78|1|L1|C|1595
*
9I78|1|L1|G|1809
9I78|1|L1|G|1810
9I78|1|L1|U|1811
9I78|1|L1|C|1812
9I78|1|L1|G|1813
9I78|1|L1|U|1814
9I78|1|L1|A|1815
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain 1
- Translocon Sec61/SecY plug domain-containing protein
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- Ribosomal protein L19
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
- Chain Ll
- Ribosomal protein eL39
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