J4_9I78_007

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|2093
9I78|1|L1|A|2094
9I78|1|L1|C|2095
9I78|1|L1|U|2096
9I78|1|L1|G|2097
*
9I78|1|L1|C|2109
9I78|1|L1|A|2110
9I78|1|L1|U|2111
9I78|1|L1|A|2112
9I78|1|L1|G|2113
*
9I78|1|L1|U|2149
9I78|1|L1|G|2150
9I78|1|L1|A|2151
9I78|1|L1|U|2152
9I78|1|L1|U|2153
*
9I78|1|L1|A|2280
9I78|1|L1|U|2281
9I78|1|L1|U|2282
9I78|1|L1|A|2283
9I78|1|L1|A|2284
9I78|1|L1|C|2285

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Ln

60S ribosomal protein L41-A

Chain Lp

60S ribosomal protein L43-like protein