J4_9I78_008

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9I78|1|L1|U|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|2155
9I78|1|L1|U|2156
9I78|1|L1|G|2157
*
9I78|1|L1|C|2211
9I78|1|L1|G|2212
*
9I78|1|L1|C|2230
9I78|1|L1|U|2231
9I78|1|L1|U|2232
9I78|1|L1|A|2233
9I78|1|L1|A|2234
9I78|1|L1|G|2235
9I78|1|L1|G|2236
9I78|1|L1|U|2237
9I78|1|L1|A|2238
9I78|1|L1|G|2239
*
9I78|1|L1|U|2273
9I78|1|L1|G|2274
9I78|1|L1|A|2275
9I78|1|L1|A|2276
9I78|1|L1|U|2277
9I78|1|L1|G|2278

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Ln

60S ribosomal protein L41-A