J4_9I78_009

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAG*UUG*CCA*UGUG

Length

15 nucleotides

Bulged bases

9I78|1|L1|A|2616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|2613
9I78|1|L1|U|2614
9I78|1|L1|A|2615
9I78|1|L1|A|2616
9I78|1|L1|G|2617
*
9I78|1|L1|U|2671
9I78|1|L1|U|2672
9I78|1|L1|G|2673
*
9I78|1|L1|C|2700
9I78|1|L1|C|2701
9I78|1|L1|A|2702
*
9I78|1|L1|U|2709
9I78|1|L1|G|2710
9I78|1|L1|U|2711
9I78|1|L1|G|2712

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lo

60S ribosomal protein L44-like protein