J4_9I88_003

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I88|1|A|C|644
9I88|1|A|A|645
9I88|1|A|A|646
9I88|1|A|G|647
*
9I88|1|A|C|669
9I88|1|A|G|670
9I88|1|A|U|671
9I88|1|A|A|672
9I88|1|A|G|673
*
9I88|1|A|C|680
9I88|1|A|G|681
9I88|1|A|A|682
9I88|1|A|G|683
*
9I88|1|A|C|695
9I88|1|A|G|696
9I88|1|A|U|697
9I88|1|A|U|698
9I88|1|A|U|699
9I88|1|A|A|700
9I88|1|A|G|701

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL35

Chain I

Large ribosomal subunit protein uL4

Chain O

Large ribosomal subunit protein uL15