J4_9I88_014
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GAC*GAUAAUAUU*AAGUGAAAG*CAC
- Length
- 24 nucleotides
- Bulged bases
- 9I88|1|a|U|183, 9I88|1|a|A|211, 9I88|1|a|A|212
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I88|1|a|G|142
9I88|1|a|A|143
9I88|1|a|C|144
*
9I88|1|a|G|178
9I88|1|a|A|179
9I88|1|a|U|180
9I88|1|a|A|181
9I88|1|a|A|182
9I88|1|a|U|183
9I88|1|a|A|184
9I88|1|a|U|185
9I88|1|a|U|186
*
9I88|1|a|A|205
9I88|1|a|A|206
9I88|1|a|G|207
9I88|1|a|U|208
9I88|1|a|G|209
9I88|1|a|A|210
9I88|1|a|A|211
9I88|1|a|A|212
9I88|1|a|G|213
*
9I88|1|a|C|227
9I88|1|a|A|228
9I88|1|a|C|229
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain q
- Small ribosomal subunit protein bS16
- Chain u
- Small ribosomal subunit protein bS20
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