J4_9I89_001

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9I89|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|C|271
9I89|1|A|C|272
*
9I89|1|A|G|416
9I89|1|A|A|417
9I89|1|A|G|418
9I89|1|A|U|419
9I89|1|A|A|420
9I89|1|A|C|421
*
9I89|1|A|G|445
9I89|1|A|G|446
9I89|1|A|A|447
9I89|1|A|A|448
9I89|1|A|U|449
9I89|1|A|C|450
9I89|1|A|U|451
9I89|1|A|G|452
*
9I89|1|A|U|467
9I89|1|A|A|468
9I89|1|A|A|469
9I89|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL28