J4_9I89_006

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9I89|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I89_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1268

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9I89|1|A|U|1350
9I89|1|A|C|1351
*
9I89|1|A|G|1375
9I89|1|A|G|1376
9I89|1|A|U|1377
9I89|1|A|U|1378
9I89|1|A|A|1379
9I89|1|A|G|1380
*
9I89|1|A|C|1441
9I89|1|A|C|1442
*
9I89|1|A|G|1641
9I89|1|A|C|1642
9I89|1|A|C|1643
9I89|1|A|C|1644
9I89|1|A|G|1645
9I89|1|A|U|1646
9I89|1|A|A|1647

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34

Chain W

Large ribosomal subunit protein uL23