J4_9I89_008

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|G|1799
9I89|1|A|A|1800
9I89|1|A|C|1801
9I89|1|A|U|1802
9I89|1|A|G|1803
*
9I89|1|A|C|1815
9I89|1|A|A|1816
9I89|1|A|C|1817
9I89|1|A|A|1818
9I89|1|A|G|1819
*
9I89|1|A|U|1854
9I89|1|A|G|1855
9I89|1|A|A|1856
9I89|1|A|C|1857
*
9I89|1|A|G|2002
9I89|1|A|U|2003
9I89|1|A|A|2004
9I89|1|A|A|2005
9I89|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2