J4_9IOB_002

3D structure

PDB id

9IOB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the hexameric DRT9-ncRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUCUA*UCUU*ACGGGG*CAACCAAGUGGUAACUUACUUUUACUUG

Length

43 nucleotides

Bulged bases

9IOB|1|D|G|80, 9IOB|1|D|A|110, 9IOB|1|D|U|120, 9IOB|1|D|U|124, 9IOB|1|D|U|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOB|1|D|U|29
9IOB|1|D|U|30
9IOB|1|D|C|31
9IOB|1|D|U|32
9IOB|1|D|A|33
*
9IOB|1|D|U|52
9IOB|1|D|C|53
9IOB|1|D|U|54
9IOB|1|D|U|55
*
9IOB|1|D|A|78
9IOB|1|D|C|79
9IOB|1|D|G|80
9IOB|1|D|G|81
9IOB|1|D|G|82
9IOB|1|D|G|83
*
9IOB|1|D|C|104
9IOB|1|D|A|105
9IOB|1|D|A|106
9IOB|1|D|C|107
9IOB|1|D|C|108
9IOB|1|D|A|109
9IOB|1|D|A|110
9IOB|1|D|G|111
9IOB|1|D|U|112
9IOB|1|D|G|113
9IOB|1|D|G|114
9IOB|1|D|U|115
9IOB|1|D|A|116
9IOB|1|D|A|117
9IOB|1|D|C|118
9IOB|1|D|U|119
9IOB|1|D|U|120
9IOB|1|D|A|121
9IOB|1|D|C|122
9IOB|1|D|U|123
9IOB|1|D|U|124
9IOB|1|D|U|125
9IOB|1|D|U|126
9IOB|1|D|A|127
9IOB|1|D|C|128
9IOB|1|D|U|129
9IOB|1|D|U|130
9IOB|1|D|G|131

Current chains

Chain D

RNA (177-MER)

Nearby chains

Chain A

RNA-dependent DNA polymerase

Chain C

RNA-dependent DNA polymerase

Chain H

RNA (177-MER)