J4_9IOT_003

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|C|601
9IOT|1|A|A|602
9IOT|1|A|A|603
9IOT|1|A|G|604
*
9IOT|1|A|C|624
9IOT|1|A|G|625
9IOT|1|A|A|626
9IOT|1|A|A|627
9IOT|1|A|G|628
*
9IOT|1|A|C|635
9IOT|1|A|G|636
9IOT|1|A|A|637
9IOT|1|A|G|638
*
9IOT|1|A|C|650
9IOT|1|A|G|651
9IOT|1|A|U|652
9IOT|1|A|U|653
9IOT|1|A|A|654
9IOT|1|A|A|655
9IOT|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL35

Chain F

50S ribosomal protein L4

Chain N

Large ribosomal subunit protein uL15