J4_9IOT_006

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9IOT|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9IOT_006 not in the Motif Atlas

Homologous match to J4_8B0X_009

Geometric discrepancy: 0.0439

The information below is about J4_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9IOT|1|A|U|1313
9IOT|1|A|C|1314
*
9IOT|1|A|G|1338
9IOT|1|A|G|1339
9IOT|1|A|U|1340
9IOT|1|A|G|1341
9IOT|1|A|A|1342
9IOT|1|A|G|1343
*
9IOT|1|A|C|1404
9IOT|1|A|U|1405
*
9IOT|1|A|A|1597
9IOT|1|A|A|1598
9IOT|1|A|U|1599
9IOT|1|A|C|1600
9IOT|1|A|G|1601
9IOT|1|A|U|1602
9IOT|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23