J4_8B0X_009

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8B0X|1|a|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B0X_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0324

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8B0X|1|a|U|1315
8B0X|1|a|C|1316
*
8B0X|1|a|G|1340
8B0X|1|a|G|1341
8B0X|1|a|U|1342
8B0X|1|a|G|1343
8B0X|1|a|A|1344
8B0X|1|a|G|1345
*
8B0X|1|a|C|1406
8B0X|1|a|U|1407
*
8B0X|1|a|A|1599
8B0X|1|a|A|1600
8B0X|1|a|U|1601
8B0X|1|a|C|1602
8B0X|1|a|G|1603
8B0X|1|a|U|1604
8B0X|1|a|A|1605

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23