J4_9JNS_003

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9JNS|1|A|G|1271, 9JNS|1|A|A|1272, 9JNS|1|A|U|1273, 9JNS|1|A|A|1274, 9JNS|1|A|A|1275, 9JNS|1|A|C|1646, 9JNS|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JNS_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.3334

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9JNS|1|A|C|1270
9JNS|1|A|G|1271
9JNS|1|A|A|1272
9JNS|1|A|U|1273
9JNS|1|A|A|1274
9JNS|1|A|A|1275
9JNS|1|A|A|1276
*
9JNS|1|A|U|1294
9JNS|1|A|C|1295
*
9JNS|1|A|G|1645
9JNS|1|A|C|1646
9JNS|1|A|U|1647
9JNS|1|A|U|1648
*
9JNS|1|A|A|2009
9JNS|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22