J4_9JPM_001

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9JPM|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPM_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5889

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9JPM|1|A|G|115
9JPM|1|A|A|116
9JPM|1|A|G|117
9JPM|1|A|U|118
9JPM|1|A|A|119
9JPM|1|A|A|120
9JPM|1|A|U|121
9JPM|1|A|G|122
*
9JPM|1|A|U|239
9JPM|1|A|G|240
*
9JPM|1|A|C|286
9JPM|1|A|U|287
9JPM|1|A|A|288
9JPM|1|A|G|289
*
9JPM|1|A|C|311
9JPM|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17