J4_9JPM_002

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9JPM|1|A|C|183, 9JPM|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPM|1|A|G|142
9JPM|1|A|A|143
9JPM|1|A|G|144
*
9JPM|1|A|C|178
9JPM|1|A|A|179
9JPM|1|A|U|180
9JPM|1|A|A|181
9JPM|1|A|A|182
9JPM|1|A|C|183
9JPM|1|A|G|184
*
9JPM|1|A|C|193
9JPM|1|A|C|194
9JPM|1|A|A|195
9JPM|1|A|A|196
9JPM|1|A|A|197
9JPM|1|A|G|198
*
9JPM|1|A|U|219
9JPM|1|A|G|220
9JPM|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20