J4_9JPM_006

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9JPM|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPM_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2754

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9JPM|1|a|C|268
9JPM|1|a|C|269
*
9JPM|1|a|G|370
9JPM|1|a|A|371
9JPM|1|a|G|372
9JPM|1|a|U|373
9JPM|1|a|A|374
9JPM|1|a|G|375
*
9JPM|1|a|U|399
9JPM|1|a|G|400
9JPM|1|a|A|401
9JPM|1|a|A|402
9JPM|1|a|U|403
9JPM|1|a|A|404
9JPM|1|a|U|405
9JPM|1|a|G|406
*
9JPM|1|a|C|421
9JPM|1|a|A|422
9JPM|1|a|A|423
9JPM|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28