J4_9JPM_008

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9JPM|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPM|1|a|C|601
9JPM|1|a|A|602
9JPM|1|a|A|603
9JPM|1|a|G|604
*
9JPM|1|a|C|624
9JPM|1|a|G|625
9JPM|1|a|A|626
9JPM|1|a|A|627
9JPM|1|a|G|628
*
9JPM|1|a|C|635
9JPM|1|a|G|636
9JPM|1|a|A|637
9JPM|1|a|G|638
*
9JPM|1|a|C|650
9JPM|1|a|G|651
9JPM|1|a|U|652
9JPM|1|a|U|653
9JPM|1|a|A|654
9JPM|1|a|A|655
9JPM|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15