J4_9JPM_011

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9JPM|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPM_011 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2286

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9JPM|1|a|U|1313
9JPM|1|a|C|1314
*
9JPM|1|a|G|1338
9JPM|1|a|G|1339
9JPM|1|a|U|1340
9JPM|1|a|G|1341
9JPM|1|a|A|1342
9JPM|1|a|G|1343
*
9JPM|1|a|C|1404
9JPM|1|a|U|1405
*
9JPM|1|a|A|1597
9JPM|1|a|A|1598
9JPM|1|a|U|1599
9JPM|1|a|C|1600
9JPM|1|a|G|1601
9JPM|1|a|U|1602
9JPM|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23