J4_9JPO_007

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPO_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0926

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9JPO|1|a|G|297
9JPO|1|a|G|298
9JPO|1|a|A|299
9JPO|1|a|A|300
9JPO|1|a|G|301
*
9JPO|1|a|C|316
9JPO|1|a|G|317
9JPO|1|a|C|318
9JPO|1|a|G|319
*
9JPO|1|a|C|323
9JPO|1|a|A|324
9JPO|1|a|G|325
*
9JPO|1|a|C|337
9JPO|1|a|G|338
9JPO|1|a|U|339
9JPO|1|a|A|340
9JPO|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24