J4_9JPP_001

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9JPP|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPP_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5771

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9JPP|1|A|G|115
9JPP|1|A|A|116
9JPP|1|A|G|117
9JPP|1|A|U|118
9JPP|1|A|A|119
9JPP|1|A|A|120
9JPP|1|A|U|121
9JPP|1|A|G|122
*
9JPP|1|A|U|239
9JPP|1|A|G|240
*
9JPP|1|A|C|286
9JPP|1|A|U|287
9JPP|1|A|A|288
9JPP|1|A|G|289
*
9JPP|1|A|C|311
9JPP|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17