J4_9JPP_006

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9JPP|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPP_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2629

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9JPP|1|a|C|268
9JPP|1|a|C|269
*
9JPP|1|a|G|370
9JPP|1|a|A|371
9JPP|1|a|G|372
9JPP|1|a|U|373
9JPP|1|a|A|374
9JPP|1|a|G|375
*
9JPP|1|a|U|399
9JPP|1|a|G|400
9JPP|1|a|A|401
9JPP|1|a|A|402
9JPP|1|a|U|403
9JPP|1|a|A|404
9JPP|1|a|U|405
9JPP|1|a|G|406
*
9JPP|1|a|C|421
9JPP|1|a|A|422
9JPP|1|a|A|423
9JPP|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28