J4_9JPP_007

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPP_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0967

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9JPP|1|a|G|297
9JPP|1|a|G|298
9JPP|1|a|A|299
9JPP|1|a|A|300
9JPP|1|a|G|301
*
9JPP|1|a|C|316
9JPP|1|a|G|317
9JPP|1|a|C|318
9JPP|1|a|G|319
*
9JPP|1|a|C|323
9JPP|1|a|A|324
9JPP|1|a|G|325
*
9JPP|1|a|C|337
9JPP|1|a|G|338
9JPP|1|a|U|339
9JPP|1|a|A|340
9JPP|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24