J4_9JPP_008

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9JPP|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPP|1|a|C|601
9JPP|1|a|A|602
9JPP|1|a|A|603
9JPP|1|a|G|604
*
9JPP|1|a|C|624
9JPP|1|a|G|625
9JPP|1|a|A|626
9JPP|1|a|A|627
9JPP|1|a|G|628
*
9JPP|1|a|C|635
9JPP|1|a|G|636
9JPP|1|a|A|637
9JPP|1|a|G|638
*
9JPP|1|a|C|650
9JPP|1|a|G|651
9JPP|1|a|U|652
9JPP|1|a|U|653
9JPP|1|a|A|654
9JPP|1|a|A|655
9JPP|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15