J4_9JQ2_006

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9JQ2|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JQ2_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2856

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9JQ2|1|a|C|268
9JQ2|1|a|C|269
*
9JQ2|1|a|G|370
9JQ2|1|a|A|371
9JQ2|1|a|G|372
9JQ2|1|a|U|373
9JQ2|1|a|A|374
9JQ2|1|a|G|375
*
9JQ2|1|a|U|399
9JQ2|1|a|G|400
9JQ2|1|a|A|401
9JQ2|1|a|A|402
9JQ2|1|a|U|403
9JQ2|1|a|A|404
9JQ2|1|a|U|405
9JQ2|1|a|G|406
*
9JQ2|1|a|C|421
9JQ2|1|a|A|422
9JQ2|1|a|A|423
9JQ2|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28