J4_9JQ2_007

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JQ2_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1023

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9JQ2|1|a|G|297
9JQ2|1|a|G|298
9JQ2|1|a|A|299
9JQ2|1|a|A|300
9JQ2|1|a|G|301
*
9JQ2|1|a|C|316
9JQ2|1|a|G|317
9JQ2|1|a|C|318
9JQ2|1|a|G|319
*
9JQ2|1|a|C|323
9JQ2|1|a|A|324
9JQ2|1|a|G|325
*
9JQ2|1|a|C|337
9JQ2|1|a|G|338
9JQ2|1|a|U|339
9JQ2|1|a|A|340
9JQ2|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24