J4_9K31_001

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUA*UGAGUG*CAAG*CAUACUC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K31|1|B|G|220
9K31|1|B|U|221
9K31|1|B|A|222
*
9K31|1|B|U|233
9K31|1|B|G|234
9K31|1|B|A|235
9K31|1|B|G|236
9K31|1|B|U|237
9K31|1|B|G|238
*
9K31|1|B|C|272
9K31|1|B|A|273
9K31|1|B|A|274
9K31|1|B|G|275
*
9K31|1|B|C|360
9K31|1|B|A|361
9K31|1|B|U|362
9K31|1|B|A|363
9K31|1|B|C|364
9K31|1|B|U|365
9K31|1|B|C|366

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

YnpsCas9

Chain C

Target DNA strand