J4_9KDV_003

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9KDV|1|L5|A|2123, 9KDV|1|L5|U|2126, 9KDV|1|L5|A|2127, 9KDV|1|L5|U|2582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|2122
9KDV|1|L5|A|2123
9KDV|1|L5|A|2124
9KDV|1|L5|A|2125
9KDV|1|L5|U|2126
9KDV|1|L5|A|2127
9KDV|1|L5|U|2128
*
9KDV|1|L5|A|2146
9KDV|1|L5|G|2147
9KDV|1|L5|G|2148
*
9KDV|1|L5|C|2578
9KDV|1|L5|A|2579
9KDV|1|L5|U|2580
9KDV|1|L5|G|2581
9KDV|1|L5|U|2582
9KDV|1|L5|U|2583
*
9KDV|1|L5|A|3513
9KDV|1|L5|G|3514

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31