J4_9KDV_009

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9KDV|1|L5|A|3887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|3884
9KDV|1|L5|U|3885
9KDV|1|L5|A|3886
9KDV|1|L5|A|3887
9KDV|1|L5|G|3888
*
9KDV|1|L5|U|3942
9KDV|1|L5|U|3943
9KDV|1|L5|G|3944
*
9KDV|1|L5|C|3971
9KDV|1|L5|C|3972
*
9KDV|1|L5|G|3981
9KDV|1|L5|G|3982
9KDV|1|L5|G|3983

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21

Chain Lo

Large ribosomal subunit protein eL42