J4_9KDV_010

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

9KDV|1|L5|U|4330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|G|4240
9KDV|1|L5|U|4241
9KDV|1|L5|A|4242
9KDV|1|L5|A|4243
*
9KDV|1|L5|U|4273
9KDV|1|L5|C|4274
*
9KDV|1|L5|G|4329
9KDV|1|L5|U|4330
9KDV|1|L5|G|4331
*
9KDV|1|L5|C|4365
9KDV|1|L5|G|4366
9KDV|1|L5|C|4367
9KDV|1|L5|C|4368

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13

Chain LV

Large ribosomal subunit protein uL14