J4_9KMU_001

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9KMU|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|C|98
9KMU|1|2|A|99
9KMU|1|2|U|100
9KMU|1|2|U|101
9KMU|1|2|A|102
9KMU|1|2|A|103
9KMU|1|2|A|104
9KMU|1|2|U|105
9KMU|1|2|C|106
*
9KMU|1|2|G|355
9KMU|1|2|C|356
9KMU|1|2|C|357
*
9KMU|1|2|G|405
9KMU|1|2|U|406
9KMU|1|2|G|407
9KMU|1|2|A|408
9KMU|1|2|C|409
*
9KMU|1|2|G|431
9KMU|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

Small ribosomal subunit protein uS12