J4_9KMY_001

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9KMY|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|C|98
9KMY|1|2|A|99
9KMY|1|2|U|100
9KMY|1|2|U|101
9KMY|1|2|A|102
9KMY|1|2|A|103
9KMY|1|2|A|104
9KMY|1|2|U|105
9KMY|1|2|C|106
*
9KMY|1|2|G|355
9KMY|1|2|C|356
9KMY|1|2|C|357
*
9KMY|1|2|G|405
9KMY|1|2|U|406
9KMY|1|2|G|407
9KMY|1|2|A|408
9KMY|1|2|C|409
*
9KMY|1|2|G|431
9KMY|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

Small ribosomal subunit protein uS12