J4_9KMZ_001

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9KMZ|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|C|98
9KMZ|1|2|A|99
9KMZ|1|2|U|100
9KMZ|1|2|U|101
9KMZ|1|2|A|102
9KMZ|1|2|A|103
9KMZ|1|2|A|104
9KMZ|1|2|U|105
9KMZ|1|2|C|106
*
9KMZ|1|2|G|355
9KMZ|1|2|C|356
9KMZ|1|2|C|357
*
9KMZ|1|2|G|405
9KMZ|1|2|U|406
9KMZ|1|2|G|407
9KMZ|1|2|A|408
9KMZ|1|2|C|409
*
9KMZ|1|2|G|431
9KMZ|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

Small ribosomal subunit protein uS12