J4_9KN0_001

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9KN0|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|C|98
9KN0|1|2|A|99
9KN0|1|2|U|100
9KN0|1|2|U|101
9KN0|1|2|A|102
9KN0|1|2|A|103
9KN0|1|2|A|104
9KN0|1|2|U|105
9KN0|1|2|C|106
*
9KN0|1|2|G|355
9KN0|1|2|C|356
9KN0|1|2|C|357
*
9KN0|1|2|G|405
9KN0|1|2|U|406
9KN0|1|2|G|407
9KN0|1|2|A|408
9KN0|1|2|C|409
*
9KN0|1|2|G|431
9KN0|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

Small ribosomal subunit protein uS12