J4_9KN6_004

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAG*CUAGCC*GGCC*GU

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|zz|A|140
9KN6|1|zz|U|141
9KN6|1|zz|A|142
9KN6|1|zz|G|143
*
9KN6|1|zz|C|250
9KN6|1|zz|U|251
9KN6|1|zz|A|252
9KN6|1|zz|G|253
9KN6|1|zz|C|254
9KN6|1|zz|C|255
*
9KN6|1|zz|G|277
9KN6|1|zz|G|278
9KN6|1|zz|C|279
9KN6|1|zz|C|280
*
9KN6|1|zz|G|283
9KN6|1|zz|U|284

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA