J4_9KN6_005

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAC*GA*UUG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|zz|G|153
9KN6|1|zz|A|154
9KN6|1|zz|A|155
9KN6|1|zz|C|156
*
9KN6|1|zz|G|171
9KN6|1|zz|A|172
*
9KN6|1|zz|U|227
9KN6|1|zz|U|228
9KN6|1|zz|G|229
*
9KN6|1|zz|C|238
9KN6|1|zz|C|239

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain SH

40S ribosomal protein S7

Chain Sb

40S ribosomal protein S27