J4_9KZU_001

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9KZU|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|C|111
9KZU|1|L5|C|112
*
9KZU|1|L5|G|278
9KZU|1|L5|A|279
9KZU|1|L5|G|280
9KZU|1|L5|U|281
9KZU|1|L5|C|282
9KZU|1|L5|G|283
*
9KZU|1|L5|C|304
9KZU|1|L5|A|305
9KZU|1|L5|A|306
9KZU|1|L5|A|307
9KZU|1|L5|G|308
9KZU|1|L5|C|309
9KZU|1|L5|G|310
*
9KZU|1|L5|U|327
9KZU|1|L5|A|328
9KZU|1|L5|A|329
9KZU|1|L5|G|330

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36