J4_9KZU_002

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9KZU|1|L5|C|216, 9KZU|1|L5|C|217, 9KZU|1|L5|A|218, 9KZU|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|C|196
9KZU|1|L5|A|197
9KZU|1|L5|A|198
9KZU|1|L5|G|199
*
9KZU|1|L5|C|215
9KZU|1|L5|C|216
9KZU|1|L5|C|217
9KZU|1|L5|A|218
9KZU|1|L5|G|219
9KZU|1|L5|C|220
9KZU|1|L5|C|221
9KZU|1|L5|C|222
*
9KZU|1|L5|G|226
9KZU|1|L5|A|227
9KZU|1|L5|C|228
*
9KZU|1|L5|G|240
9KZU|1|L5|G|241
9KZU|1|L5|U|242
9KZU|1|L5|A|243
9KZU|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26