J4_9KZU_003

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCC*GCC*GCGC*GGAGCG

Length

17 nucleotides

Bulged bases

9KZU|1|L5|G|1271, 9KZU|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|C|981
9KZU|1|L5|U|982
9KZU|1|L5|C|983
9KZU|1|L5|C|984
*
9KZU|1|L5|G|1070
9KZU|1|L5|C|1071
9KZU|1|L5|C|1072
*
9KZU|1|L5|G|1240
9KZU|1|L5|C|1241
9KZU|1|L5|G|1242
9KZU|1|L5|C|1243
*
9KZU|1|L5|G|1268
9KZU|1|L5|G|1269
9KZU|1|L5|A|1270
9KZU|1|L5|G|1271
9KZU|1|L5|C|1272
9KZU|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29