J4_9KZU_015

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CUGC*GUG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|zz|G|133
9KZU|1|zz|A|134
9KZU|1|zz|G|135
*
9KZU|1|zz|C|289
9KZU|1|zz|U|290
9KZU|1|zz|G|291
9KZU|1|zz|C|292
*
9KZU|1|zz|G|301
9KZU|1|zz|U|302
9KZU|1|zz|G|303
*
9KZU|1|zz|C|314
9KZU|1|zz|C|315

Current chains

Chain zz

HCV IRES

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain Sa

40S ribosomal protein S26