J4_9KZU_016

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GA*UUG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|zz|G|153
9KZU|1|zz|A|154
9KZU|1|zz|A|155
9KZU|1|zz|C|156
*
9KZU|1|zz|G|171
9KZU|1|zz|A|172
*
9KZU|1|zz|U|227
9KZU|1|zz|U|228
9KZU|1|zz|G|229
*
9KZU|1|zz|C|238
9KZU|1|zz|C|239

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain SH

40S ribosomal protein S7

Chain Sb

40S ribosomal protein S27