J4_9KZX_008

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|3634
9KZX|1|L5|A|3635
9KZX|1|L5|C|3636
9KZX|1|L5|U|3637
9KZX|1|L5|G|3638
*
9KZX|1|L5|C|3650
9KZX|1|L5|A|3651
9KZX|1|L5|A|3652
9KZX|1|L5|A|3653
9KZX|1|L5|G|3654
*
9KZX|1|L5|U|3690
9KZX|1|L5|G|3691
9KZX|1|L5|A|3692
9KZX|1|L5|U|3693
9KZX|1|L5|U|3694
*
9KZX|1|L5|A|3821
9KZX|1|L5|U|3822
9KZX|1|L5|G|3823
9KZX|1|L5|A|3824
9KZX|1|L5|A|3825
9KZX|1|L5|C|3826

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA