J4_9MKK_008

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9MKK|1|a|G|1271, 9MKK|1|a|A|1272, 9MKK|1|a|U|1273, 9MKK|1|a|A|1275, 9MKK|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|a|C|1270
9MKK|1|a|G|1271
9MKK|1|a|A|1272
9MKK|1|a|U|1273
9MKK|1|a|A|1274
9MKK|1|a|A|1275
9MKK|1|a|A|1276
*
9MKK|1|a|U|1294
9MKK|1|a|C|1295
*
9MKK|1|a|G|1645
9MKK|1|a|C|1646
9MKK|1|a|U|1647
9MKK|1|a|U|1648
*
9MKK|1|a|A|2009
9MKK|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain z

50S ribosomal protein L32