J4_9MOR_001

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9MOR|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MOR_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2255

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9MOR|1|1|C|268
9MOR|1|1|C|269
*
9MOR|1|1|G|370
9MOR|1|1|A|371
9MOR|1|1|G|372
9MOR|1|1|U|373
9MOR|1|1|A|374
9MOR|1|1|G|375
*
9MOR|1|1|U|399
9MOR|1|1|G|400
9MOR|1|1|A|401
9MOR|1|1|A|402
9MOR|1|1|U|403
9MOR|1|1|A|404
9MOR|1|1|U|405
9MOR|1|1|G|406
*
9MOR|1|1|C|421
9MOR|1|1|A|422
9MOR|1|1|A|423
9MOR|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein bL9

Chain X

50S ribosomal protein L28