J4_9MOR_006

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9MOR|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MOR_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.093

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9MOR|1|1|U|1313
9MOR|1|1|C|1314
*
9MOR|1|1|G|1338
9MOR|1|1|G|1339
9MOR|1|1|U|1340
9MOR|1|1|G|1341
9MOR|1|1|A|1342
9MOR|1|1|G|1343
*
9MOR|1|1|C|1404
9MOR|1|1|U|1405
*
9MOR|1|1|A|1597
9MOR|1|1|A|1598
9MOR|1|1|U|1599
9MOR|1|1|C|1600
9MOR|1|1|G|1601
9MOR|1|1|U|1602
9MOR|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23